Jupyter Notebooks for analysis¶
We are constantly developing new tools to analyze the trajectories that idtracker.ai outputs. We provide Jupyter Notebooks with examples of analysis routines for groups of animals.
The trajectorytools python module¶
You can install the trajectorytools module from the following GitHub repository: https://github.com/fjhheras/trajectorytools
You can find some analysis routines from 1 implemented with the trajectorytools module in the Jupyter Lab Notebook trajcetoroies.ipynb in the following GitLab repository: https://gitlab.com/polavieja_lab/idtrackerai_notebooks.
Figures generated from our Jupyter Notebooks for a video of 10 juvenile fish¶
Velocities and accelerations¶
Density of neighbours around a focal fish¶
Polar distributions of positions, turnings and accelerations¶
Inter-individual distance histograms compared with shuffled trajectories¶
Hinz, R. C., & de Polavieja, G. G. (2017). Ontogeny of collective behavior reveals a simple attraction rule. Proceedings of the National Academy of Sciences